Below are some locations important to the supernatural side of San Fran. These are all locations that the PCs visited during the course of their investigations, listed roughly in order that they visited. I skipped places they went that are totally mundane. I took pretty much full license with the geography of the real life city, so some of these places aren't even based remotely on the real world.
The Old Metropole- A condemned theatre used by the Shadow Council as a meeting place or staging ground. Although condemned, the building is perfectly sound, and the actual paperwork to get the place demolished constantly disappears, gets misfiled, or the money to demolish it is taken and reallocated to higher priority city projects.
The Goblin Market- Most towns with a supernatural population have a Goblin Market, the place where supernatural merchants deal in otherworldly wares and services. The Goblin Market is on the Road (the midway point between our world and and other dimensions, detailed on my blog a month or so ago...comparable to the Near Umbra in White Wolf or the Twilight/Gloom in the Nightwatch series), though it's location roughly corresponds to North Beach, near all of the mundane flea markets. The PCs visited this place to find the Juiceman and ended up buying a magic maul, the Hammer of the North, from the minotaur.
Sultana's- Located South of Market, Sultana's is a Middle Eastern themed cafe and hookah bar. (Operating that section as a private club) Sultana's is a gathering place for the shi'irs of San Francisco, as well as supernaturals of Middle Eastern decent. There is a special meeting room that exists only on the Road where patrons can conduct magical business or talk shop.
Saint Cecelia's Hospital- This hospital has a special wing, maintained by the Shadow Council, for the convalescence of supernaturals. The ward employs many glamours, illusions, and wards. Many of the nurses and doctors in this ward are mundanes who are aware of the supernatural world.
The Kettle Black- A store that sells custom wrought iron goods, both decorative and functional. The proprietor is Maureen Dubois, an Artificer specializing in iron goods. Fae-Blooded tend to be uncomfortable in her shop, but her skills are sought after by a wide variety of patrons. Maureen is licensed with the Shadow Council and operates all over her business above board with them.
Never Ends Well- Located outside of San Francisco on the highway, this dive bar is run by Big Jim Raag and serves as a front for his biker gang's criminal operations. The place is currently undergoing some repairs after a brawl in their backroom VIP club. (A punch-up between the PCs and the Wolfpack while Amir tried to bind Hasan. )